Archive for ICMS

computational methods for statistical mechanics [day #2]

Posted in Mountains, pictures, Running, Statistics, Travel, University life with tags , , , , , , , , , , , on June 5, 2014 by xi'an

Arthur Seat, Edinburgh, Sep. 7, 2011

The last “tutorial” talk at this ICMS workshop [“at the interface between mathematical statistics and molecular simulation”] was given by Tony Lelièvre on adaptive bias schemes in Langevin algorithms and on the parallel replica algorithm. This was both very interesting because of the potential for connections with my “brand” of MCMC techniques and rather frustrating as I felt the intuition behind the physical concepts like free energy and metastability was almost within my reach! The most manageable time in Tony’s talk was the illustration of the concepts through a mixture posterior example. Example that I need to (re)read further to grasp the general idea. (And maybe the book on Free Energy Computations Tony wrote with Mathias Rousset et Gabriel Stoltz.) A definitely worthwhile talk that I hope will get posted on line by ICMS. The other talks of the day were mostly of a free energy nature, some using optimised bias in the Langevin diffusion (except for Pierre Jacob who presented his non-negative unbiased estimation impossibility result).

computational methods for statistical mechanics [day #1]

Posted in Mountains, pictures, Running, Statistics, Travel, University life with tags , , , , , , , , , , , , on June 4, 2014 by xi'an

Arthur Seat, Edinburgh, Sep. 7, 2011

The first talks of the day at this ICMS workshop [“at the interface between mathematical statistics and molecular simulation”] were actually lectures introducing molecular simulation to statisticians by Michael Allen from Warwick and computational statistics to physicists by Omiros Papaspiliopoulos. Allen’s lecture was quite pedagogical, even though I had to quiz wikipedia for physics terms and notions. Like a force being the gradient of a potential function. He gave a physical meaning to Langevin’ equation. As well as references from the Journal of Chemical Physics that were more recent than 1953. He mentioned alternatives to Langevin’s equation too and I idly wondered at the possibility of using those alternatives as other tools for improved MCMC simulation. Although introducing friction may not be the most promising way to speed up the thing… He later introduced what statisticians call Langevin’ algorithm (MALA) as smart Monte Carlo (Rossky et al., …1978!!!). Recovering Hamiltonian and hybrid Monte Carlo algorithms as a fusion of molecular dynamics, Verlet algorithm, and Metropolis acceptance step! As well as reminding us of the physics roots of umbrella sampling and the Wang-Landau algorithm.

Omiros Papaspiliopoulos also gave a very pedagogical entry to the convergence of MCMC samplers which focussed on the L² approach to convergence. This reminded me of the very first papers published on the convergence of the Gibbs sampler, like the 1990 1992 JCGS paper by Schervish and Carlin. Or the 1991 1996 Annals of Statistics by Amit. (Funny that I located both papers much earlier than when they actually appeared!) One surprising fact was that the convergence of all reversible  ergodic kernels is necessarily geometric. There is no classification of kernels in this topology, the only ranking being through the respective spectral gaps. A good refresher for most of the audience, statisticians included.

The following talks of Day 1 were by Christophe Andrieu, who kept with the spirit of a highly pedagogical entry, covering particle filters, SMC, particle Gibbs and pseudo-marginals, and who hit the right tone I think given the heterogeneous audience. And by Ben Leimkuhler about particle simulation for very large molecular structures. Closing the day by focussing on Langevin dynamics. What I understood from the talk was an improved entry into the resolution of some SPDEs. Gaining two orders when compared with Euler-Marayama.  But missed the meaning of the friction coefficient γ converging to infinity in the title…

5 Munros, enough for a day…

Posted in Mountains, pictures, Running, University life with tags , , , , , , on June 2, 2014 by xi'an

BenLawersTaking advantage of cheap [early] Sunday morning flights to Edinburgh, I managed to bag  a good hiking day (and three new Munros) within my trip to Scotland. I decided about the hike in the plane, picking the Lawers group as one of the closest to Edinburgh… The fair sequence of Munros in the group (5!) made it quite appealing [for a Munro-bagger], until I realised I would have to walk on a narrow road with no side-walk for 6km to complete the loop. Hence I decided on turning back after the third peak (An Stuc, recently promoted to Munro-fame!), which meant re-climbing the first two Munros from the “other” side, with a significant addition to the total differential (+1500m).  The weather was traditional Scottish, with plenty of clouds, gales and gusts, a few patches of blue sky, and a pleasant drizzle for the last hour. It did not seem to bother the numerous walkers passed on the first part of the trail. As usual, an additional reward with hiking or climbing in Scotland is that one can be back in time in town (i.e., Edinburgh) for the evening curry! Even when leaving from Paris in the morning.

LochTay

computational methods for statistical mechanics

Posted in Mountains, pictures, Running, Statistics, Travel, University life with tags , , , , , , , , , , , , on May 30, 2014 by xi'an

North Bridge, Edinburgh, Scotland, Apr. 24, 2012, on our way to the conference dinner at The Magnum

Next weak (hopefully not weak!) week,  I will have the pleasure of visiting Scotland again! Indeed, I have been invited to take part to an ICMS workshop on the above topic, located “at the interface between mathematical statistics and molecular simulation”. A wonderful opportunity to meet researchers in computational physics, if challenging because of the different notations and focus as already experience im Hamburg. And to talk about some of my most current MCMC research, if I have time to modify my talk and complete a submission to NIPS… All this in the great environment of ICMS (International Centre for Mathemtical Sciences). And forecasting a pleasant time in Edinburgh, on Arthur’s Seat, and hopefully in the Scottish Highlands.

Edinburgh sunset

Posted in pictures, Travel, University life with tags , , , , , on April 26, 2012 by xi'an