Archive for Université de Montpellier

next OWABI webinar [27 March]

Posted in pictures, Statistics, Uncategorized, University life with tags , , , , , , , , , , , , , , , , on March 25, 2025 by xi'an


The next One World Approximate Bayesian Inference (OWABI) Seminar is scheduled on Thursday the 27th of March at 11am UK time (12am CET) with the speaker being Meïli Baragatti (Université de Montpellier)

 Approximate Bayesian Computation with Deep Learning and Conformal Prediction

Abstract: Approximate Bayesian Computation (ABC) methods are commonly used to approximate posterior distributions in models with unknown or computationally intractable likelihoods. Classical ABC methods are based on nearest neighbour type algorithms and rely on the choice of so-called summary statistics, distances between datasets and a tolerance threshold. Recently, methods combining ABC with more complex machine learning algorithms have been proposed to mitigate the impact of these “user-choices”. In this talk, I will present you the first, to our knowledge, ABC method completely free of summary statistics, distance, and tolerance threshold. Moreover, in contrast with usual generalisations of the ABC method, it associates a confidence interval (having a proper frequentist marginal coverage) with the posterior mean estimation (or other moment-type estimates). This method, named ABCD-Conformal, uses a neural network with Monte Carlo Dropout to provide an estimation of the posterior mean (or other moment type functionals), and conformal theory to obtain associated confidence sets. I will compare its performances with other ABC methods on several examples, and show you that it is efficient for estimating multidimensional parameters, while being “amortised”.

Keywords: simulation-based inference, approximate Bayesian computation, neural posterior estimation, convolutional neural networks, dropout, conformal prediction

on private universities in France [by Jean-Michel Marin]

Posted in Statistics with tags , , , , , , , , , , , , , on November 26, 2024 by xi'an

off to Montpellier

Posted in pictures, Travel, University life with tags , , , , , , , , , , on November 3, 2024 by xi'an

the new DIYABC-RF

Posted in Books, pictures, R, Statistics, Wines with tags , , , , , , , , , , , , , , , , on April 15, 2021 by xi'an

My friends and co-authors from Montpellier have released last month the third version of the DIYABC software, DIYABC-RF, which includes and promotes the use of random forests for parameter inference and model selection, in connection with Louis Raynal’s thesis. Intended as the earlier versions of DIYABC for population genetic applications. Bienvenue!!!

The software DIYABC Random Forest (hereafter DIYABC-RF) v1.0 is composed of three parts: the dataset simulator, the Random Forest inference engine and the graphical user interface. The whole is packaged as a standalone and user-friendly graphical application named DIYABC-RF GUI and available at https://diyabc.github.io. The different developer and user manuals for each component of the software are available on the same website. DIYABC-RF is a multithreaded software on three operating systems: GNU/Linux, Microsoft Windows and MacOS. One can use the program can be used through a modern and user-friendly graphical interface designed as an R shiny application (Chang et al. 2019). For a fluid and simplified user experience, this interface is available through a standalone application, which does not require installing R or any dependencies and hence can be used independently. The application is also implemented in an R package providing a standard shiny web application (with the same graphical interface) that can be run locally as any shiny application, or hosted as a web service to provide a DIYABC-RF server for multiple users.

gone South [jatp]

Posted in Mountains, pictures, Statistics, Travel, University life, Wines with tags , , , , , , , , on March 27, 2021 by xi'an