Archive for posterior sampling

snowballs in summer

Posted in Books, Statistics with tags , , , , , , on September 13, 2023 by xi'an

A new arXival on nested sampling, Snowballing Nested Sampling by Johannes Buchner, just appeared. The idea behind this short note is to increase the number of “live” points at each iteration. (How?! Depending on how the different additions are dependent, the effective sample size will vary.) This exacerbates the tendency of the algorithm to concentrate on high density regions.

“Loosely speaking, each dead point from a run with K is split into two dead points from a run with K′ live points. The noise in the nested sampling estimate due to more dead points is also reduced, because the variance is inversely proportional to K.”

The following line is most puzzling (K being the number of live points and M the number of MCMC steps to simulate from the restricted prior):

“Based on this [argument], K → ∞ with fixed M achieves the properties of M → ∞ with fixed K.”

which connects with the ambiguity of running the MCMC move at each nested iteration a certain number M of steps, even though I always thought a single step was theoretically enough. In practice, this single step may further take forever if no trick is available for simulating from the constrained prior. And when K increases, so does the correlation unless iid sampling can be implemented, which does not sound realistic.

Hastings at 50, from a Metropolis

Posted in Kids, pictures, Running, Travel with tags , , , , , , , , , , , , , , , , , , , , , , on January 4, 2020 by xi'an

A weekend trip to the quaint seaside city of Le Touquet Paris-Plage, facing the city of Hastings on the other side of the Channel, 50 miles away (and invisible on the pictures!), during and after a storm that made for a fantastic watch from our beach-side rental, if less for running! The town is far from being a metropolis, actually, but it got its added surname “Paris-Plage” from British investors who wanted to attract their countrymen in the late 1800s. The writers H.G. Wells and P.G. Wodehouse lived there for a while. (Another type of tourist, William the Conqueror, left for Hastings in 1066 from a wee farther south, near Saint-Valéry-sur-Somme.)

And the coincidental on-line publication in Biometrika of a 50 year anniversary paper, The Hastings algorithm at fifty by David Dunson and James Johndrow. More of a celebration than a comprehensive review, with focus on scalable MCMC, gradient based algorithms, Hamiltonian Monte Carlo, nonreversible Markov chains, and interesting forays into approximate Bayes. Which makes for a great read for graduate students and seasoned researchers alike!