Archive for misspecified model

ISBA⁵

Posted in pictures, Running, Statistics, Travel, University life with tags , , , , , , , , , , , , , , , , , , , on July 4, 2026 by xi'an

After a pleasant run under the pouring rain (noisy rain that had not helped with my sleep or lack thereof), I attended both morning episodes of Calibrated Bayes, with a range of interesting, mostly novel, questions and solutions. And rekindling my interrogations about overparameterised models and model misspecification within a Bayesian framework. And the elusive notion of outliers.

The noon discussion around our report as the committee on the future of ISBA conferences went on rather well, given the circumstances, with about 50 participants with ideas and opinions on the opportunity of splitting the ISBA World into multiple hubs. And on the practical difficulties. (Despite the itch to do it, I did not intervene with my counter-objections to most of the raised objections! Nor mentioned BayesComp in Aussois.) Participants of the (unofficial) 2021 mirror in Marseille brought some welcomed support!

Daniele Durante’s Bayarri lecture on skew symmetric approximations was also attuned to the approximation spirit of the morning. The symmetrisation of the target reminded me of our (unpublished) folded method. With the (unrelated) question of the statistical meaning of a higher order Laplace expansion. And the calibration of this skewed approximation.

The final session on Cut Bayes couldn’t be missed!, since this has been an interest of mine’s since MCMSki IV in Chamonix! With an automated cut model construction by Robert Goude and an optimised choice of generalised Bayes posteriors by David Nott.

robust simulation-based inference

Posted in Books, pictures, Statistics, University life with tags , , , , , , , , , , , , , , on March 7, 2026 by xi'an

This new arXival by Lorenzo Tomaselli, Valérie Ventura, and Larry Wasserman (from CMU) considers simulation-based inference under model misspecification (as we did for ABC in our 2020 Series B paper). Which is almost always the case. In the paper, SBI is defined as producing N parameters and N samples from the prior and the corresponding sampling distribution, respectively, and then doubling the resulting samples by permuting at random the parameters θ. This means that the second half is distributed from the product of the prior and of the marginal, hence that the classification odds ratio is equal to the likelihood, hence providing an estimation method (andlikelihood trick) à la Geyer. From this estimate, an ABC p-value can be derived, but it is incorrect as such when the model is misspecified. Hence the use of the Hellinger discrepancy, the power divergence and the kernel distance (or MMD) as alternatives to the misspecified MLE.

The paper then expands on approximating density ratios by virtue of a reproducing kernel Hilbert space, using a Gaussian kernel. (With a nice remark on requiring only one single ratio estimator for all values of θ, albeit in the joint space.) And focus on a studentized MMD estimator (à la e-value) to build a confidence set that remains valid under model misspecification. And without regularity assumptions.

Another approach is further explored, based on exponential tilting—of which I am not a great fan, from being highly dependent on the choice of the pseudo-sufficient statistic to require an intractable normalising constant, to requiring an extra optimization, even though I appreciate the mathematical appeal of the construct. Which seems to require a sample simulation for each value of θ at the learning stage, albeit relying on the same likelihood trick. The appropriateness of the tilting can be tested by a goodness of fit test tailored for the SBI structure, which sounds rather greedy in the required simulations. 

Besides the g-and-k distribution example (which, as pointed out several times on the ‘Og, is not intractable, strictly speaking!), the paper studies a mixture example, despite Larry dubbing them as evil as tequila a long while ago! (The paper also offers a section called accoutrements, which is my first encounter with this use of the term, usually found in medieval contexts!)

Note that Larry will present the paper at the OWABI webinar next 25 March!

[fool’s] gold standard science

Posted in Books, pictures, Travel, University life with tags , , , , , , , , , , , , , , , on June 11, 2025 by xi'an

In this new presidential order of 23 May 2025, Trump pretends to

“restore the scientific integrity policies of my first Administration and ensures that agencies practice data transparency, acknowledge relevant scientific uncertainties, are transparent about the assumptions and likelihood of scenarios used, approach scientific findings objectively, and communicate scientific data accurately”

repeating his goal in

“restoring a gold standard for science to ensure that federally funded research is transparent, rigorous, and impactful, and that Federal decisions are informed by the most credible, reliable, and impartial scientific evidence available”

where

““Weight of scientific evidence” means an approach to scientific evaluation in which each piece of relevant information is considered based on its quality and relevance, and then transparently integrated with other relevant information to inform the scientific evaluation prior to making a judgment about the scientific evaluation. Quality and relevance determinations, at a minimum, should include consideration of study design, fitness for purpose, replicability, peer review, and transparency and reliability of data.”

While the order that

“science [in a federal agency should be] conducted in a manner that is:
(i) reproducible;
(ii) transparent;
(iii) communicative of error and uncertainty;
(iv) collaborative and interdisciplinary;
(v) skeptical of its findings and assumptions;
(vi) structured for falsifiability of hypotheses;
(vii) subject to unbiased peer review;
(viii) accepting of negative results as positive outcomes; and
(ix) without conflicts of interest”

sounds nice and dandy, incl. even a Popperian item!—while I highly doubt the Agent Orange has ever read anything from the author of Open society and its enemies—as well as an assessment of uncertainty and a critical look at the role of models—as if we were not, as a whole, following or trying to follow these tenets!—, the true intent of this order is to submit all research produced by federal agents and federally funded researchers to a vetting by political appointees before submission to a (vetted) scientific journal. As already been put into practice in some Departments. The rosy terms that set how science should be done are turned tupsy-turvy to the Trump administration Newspeak, while the purges in said administration render quality control more illusory than ever… Even the use of the term Gold Standard in a US policy declaration shows how little Trump understands about the term, given the USA abandoned at least twice the gold standard, in 1933 and 1978.

A few days after I wrote this piece, the New York Times published an article pointing out the above (in better terms) and reporting on an open letter from Stand Up for Science signalling the dreadful consequences of the executive order. With a primary correction to the above picture. And the central message that

We view this Executive Order as an escalation of the ongoing assault on science. The first six sections employ common scientific language to spell out a “gold standard” for science that would not strengthen science, but instead would introduce stifling limits on intellectual freedom in our Nation’s laboratories and federal funding agencies. Notably, the order comes from an administration that has already defunded areas of research they do not agree with, pushed vaccine misinformation despite widespread evidence,  lied about the impacts of climate change, and incorrectly defined sex determination as binary, when biology proves it is not, in their own Executive Order. Throughout the document, scientific language is hijacked, and ideas are turned on their heads.

And then Andrew decided to discuss its ridiculness on 03 June and again on 03 June. (Which made me realize polygraphs are still used by US law enforcement agencies!)

nonparametric ABC [seminar]

Posted in pictures, Statistics, University life with tags , , , , , , , , , , , , , on June 3, 2022 by xi'an

Puzzle: How do you run ABC when you mistrust the model?! We somewhat considered this question in our misspecified ABC paper with David and Judith. An AISTATS 2022 paper by Harita Dellaporta (Warwick), Jeremias Knoblauch,  Theodoros Damoulas (Warwick), and François-Xavier Briol (formerly Warwick) is addressing this same question and Harita presented the paper at the One World ABC webinar yesterday.

It is inspired from Lyddon, Walker & Holmes (2018), who place a nonparametric prior on the generating model, in top of the assumed parametric model (with an intractable likelihood). This induces a push-forward prior on the pseudo-true parameter, that is, the value that brings the parametric family the closest possible to the true distribution of the data. Here defined as a minimum distance parameter, the maximum mean discrepancy (MMD). Choosing RKHS framework allows for a practical implementation, resorting to simulations for posterior realisations from a Dirichlet posterior and from the parametric model, and stochastic gradient for computing the pseudo-true parameter, which may prove somewhat heavy in terms of computing cost.

The paper also containts a consistency result in an ε-contaminated setting (contamination of the assumed parametric family). Comparisons like the above with a fully parametric Wasserstein-ABC approach show that this alter resists better misspecification, as could be expected since the later is not constructed for that purpose.

Next talk is on 23 June by Cosma Shalizi.

conditioning on insufficient statistics in Bayesian regression

Posted in Books, Statistics, University life with tags , , , , , , , , , , , , on October 23, 2021 by xi'an

“…the prior distribution, the loss function, and the likelihood or sampling density (…) a healthy skepticism encourages us to question each of them”

A paper by John Lewis, Steven MacEachern, and Yoonkyung Lee has recently appeared in Bayesian Analysis. Starting with the great motivation of a misspecified model requiring the use of a (thus necessarily) insufficient statistic and moving to their central concern of simulating the posterior based on that statistic.

Model misspecification remains understudied from a B perspective and this paper is thus most welcome in addressing the issue. However, when reading through, one of my criticisms is in defining misspecification as equivalent to outliers in the sample. An outlier model is an easy case of misspecification, in the end, since the original model remains meaningful. (Why should there be “good” versus “bad” data) Furthermore, adding a non-parametric component for the unspecified part of the data would sound like a “more Bayesian” alternative. Unrelated, I also idly wondered at whether or not normalising flows could be used in this instance..

The problem in selecting a T (Darjeeling of course!) is not really discussed there, while each choice of a statistic T leads to a different signification to what misspecified means and suggests a comparison with Bayesian empirical likelihood.

“Acceptance rates of this [ABC] algorithm can be intolerably low”

Erm, this is not really the issue with ABC, is it?! Especially when the tolerance is induced by the simulations themselves.

When I reached the MCMC (Gibbs?) part of the paper, I first wondered at its relevance for the mispecification issues before realising it had become the focus of the paper. Now, simulating the observations conditional on a value of the summary statistic T is a true challenge. I remember for instance George Casella mentioning it in association with a Student’s t sample in the 1990’s and Kerrie and I having an unsuccessful attempt at it in the same period. Persi Diaconis has written several papers on the problem and I am thus surprised at the dearth of references here, like the rather recent Byrne and Girolami (2013), Florens and Simoni (2015), or Bornn et al. (2019). In the present case, the  linear model assumed as the true model has the exceptional feature that it leads to a feasible transform of an unconstrained simulation into a simulation with fixed statistics, with no measure theoretic worries if not free from considerable efforts to establish the operation is truly valid… And, while simulating (θ,y) makes perfect sense in an insufficient setting, the cost is then precisely the same as when running a vanilla ABC. Which brings us to the natural comparison with ABC. While taking ε=0 may sound as optimal for being “exact”, it is not from an ABC perspective since the convergence rate of the (summary) statistic should be roughly the one of the tolerance (Fearnhead and Liu, Frazier et al., 2018).

“[The Borel Paradox] shows that the concept of a conditional probability with regard to an isolated given hypothesis whose probability equals 0 is inadmissible.” A. Колмого́ров (1933)

As a side note for measure-theoretic purists, the derivation of the conditional of y given T(y)=T⁰ is arbitrary since the event has probability zero (ie, the conditioning set is of measure zero). See the Borel-Kolmogorov paradox. The computations in the paper are undoubtedly correct, but this is only one arbitrary choice of a transform (or conditioning σ-algebra).