Archive for refereeing

scolded!

Posted in Books, Kids, University life with tags , , , , , , , , , on October 9, 2026 by xi'an

I recently received a request for refereeing a paper for a journal I had never heard of, in a field far, far away from my own, with an abstract that indicated little innovation beyond transferring a by now standard technique to this very field. Given the volume of such requests, I immediately declined and received the scolding and peeved reply, as of below, from said journal editor! (The above picture is from Bayesian Core, not from the paper submitted.)

Invited Reviewer:

Thank you for letting us know that you are not willing to review the submission, “Bayesian Analysis of Mixtures with an Unknown Number of Components &tc,” for Journal of Some Socio-Economics Issues®.

It is most unfortunate that you did not choose to make your impression that “the contents sound very standard given the existing literature” known to the author/s on behalf of the Journal.  It would certainly have aided them in the longer run.
We also find it rather extraordinary for a potential reviewer to turn down an invitation “because there is little possibility I [will] ever publish in your journal”.  So much for fostering your discipline and academic excellence outside of a specific circle of publications … 

Best regards,

The editor

no privacy in nature

Posted in Books, Statistics, University life with tags , , , , , , , , , on September 26, 2026 by xi'an

A paper about privacy (or lack thereof) in Nature by Knolle et al. about medical AI models that exhibit a weakness to membership privacy attacks thru multiple queries of the public model. As discussed in a commentary article by Zhang & Ghassemi, a membership privacy attack proves successful when the confidence of the model prediction jumps to higher values for a real target of interest compared with an imaginary one. This obviously assume that users (and attackers) may repeat queries ad nauseam from the model, which differs from our Bayesian privacy setting where the output is provided once and only once (whatever the release mechanism is).

The attacker is modelled as resorting to a basic likelihood-ratio MIAs3,4, that is, a test based on the prediction confidence attached to the target model with the null being that the target is not a member:

“the parameters of the distributions under the two hypotheses are specified by parametric fitting of sample confidence values obtained from reference models. Reference models are models assumed to be trained by the attacker and are ideally, but not necessarily, of similar architecture as the target model and trained on data similar to the training dataset” – M Knolle & al.

but the paper does not provide further details about inferring about the model parameters. The following sentence is also unclear

“objectively larger threats are posed by privacy attacks with stronger assumptions on a potential attacker, such as access to model parameters17, access to parameter updates during model training18 (…) By contrast, the type of attack we consider here requires querying the target model only once (to obtain a prediction for the target record)” – M Knolle & al.

in that, indeed, returning the model parameter estimates is more informative about the data than a black-box prediction interface, but I miss the single query point as it seems to me that the attacker must multiply the queries to build a confidence distribution under both hypotheses.

“Purely technical measures, such as a mathematical approach called differential privacy9, often create performance trade-offs10 that are too limiting for medical AI tools. Instead, what is needed are regulatory and sociotechnical safeguards, such as privacy audits and risk assessments, that are specific to the domain in question.” – H Zhang & M Ghassemi

“our results indicate that privacy attacks against AI models may be much more effective at compromising the privacy of individual data contributors than previously thought. This suggests that current AI privacy risk reporting practices may underestimate individual-level risk and thus motivates the integration of mathematically verifiable risk mitigation strategies such as differential privacy (DP) into medical AI model development workflows.” – M Knolle & al.

“the finding that record-level differential privacy is insufficient for multi-record patients is particularly impactful and has clear policy and implementation implications” –Referee #2

“we also found that the full mitigation of MIAs for all data-contributing patients requires stricter levels of privacy protection (ϵ, δ ) smaller than previously believed. Moreover, our results also show that fully mitigating MIAs requires DP accounting at the patient- rather than the record-level.” – M Knolle & al.

In a funny (?) clash, the authors of the paper and those of the comment and a referee seem to disagree on the pertinence of differential privacy guarantees in this context. But the conclusion remains very vague on a rigorous way to assert privacy leaks and confidentiality protection for a given AI and its supporting dataset.

 

 

peer review week 2025

Posted in Books, University life with tags , , , , , , , , , , on September 17, 2025 by xi'an

when open publishing is not fair [PCI webinar, 20 March, 4pm CET]

Posted in Books, University life with tags , , , , , , , , , , , on March 15, 2025 by xi'an

9th seminar of the PCI webinar series

Mandatory registration using this link: https://univ-cotedazur.zoom.us/meeting/register/rz8ZKReZQeqs-3yR3S6q4g

When Open Publishing Is Not Fair

Sabina Leonelli (Technical University of Munich, TUM)

Summary: There are obvious ways in which Open Access has augmented inequity rather than mitigating it, for instance in relation to Author Publishing Costs and the differential access that researchers based in academic institutions around the world may have to publishing deals and packages. Less obvious but equally fundamental are inequities in the access to infrastructures, skills and information fostering an effective use of online resources ranging from Open Access journals to Open Data infrastructures. Most importantly, openness as a paradigm of “sharing” is predicated on a model of research practice that does not fit well with most domains and methods of research, and particularly with science done in low-resourced environments. I reflect on these issues and draw on examples and cases emerging from the PHIL_OS project (“A Philosophy of Open Science for Diverse Research Environments”; www.opensciencestudies.eu ), as well as my experiences as Open Science advocate and participant in Open Access debates over the last ten years.

Speaker’s bio: After high school in Italy, Sabina Leonelli studied History and Philosophy of Science at University College London (BSc Hons, 2000) and London School of Economics (MSc, 2001). She earned a PhD from Vrije Universiteit Amsterdam (2007), while research assistant for Hasok Chang and attending the Dutch graduate schools for STS and philosophy. After coming back to LSE to work with Mary Morgan (2006-2008), she moved to the Centre for the Study of the Life Sciences at the University of Exeter, which she directed from 2013 to 2024. She was appointed TUM Professor on 09/24. Building on philosophical, historical and social science methods and collaborations with scientists and policy-makers, Sabina Leonelli studies: (1) the role of technology, data and organisms in knowledge production, and especially how computing and digitalisation efforts are transforming research and its social dynamics and roles; and (2) the institutionalisation of Open Science as a window on the methods, epistemology and political economy of contemporary scientific inquiry, particularly in the life, biomedical and environmental sciences.

What is the PCI webinar series?
-What is it? Seminars on research practices, publication practices, evaluation, scientific integrity, meta-research.
-How does it work? Remote conferences using zoom with registration.
-For whom is it? For anyone interested in scholarly publication, all PCI users, all PCI recommenders who do preprint evaluations for PCI, authors of articles, etc.
-When is it? Once a quarter
-Why is it for? To learn about scholarly publishing, to improve our knowledge about scholarly review, to become better reviewers, to create a sense of community among PCI users.

Find details about the PCI webinar series and past seminars at https://peercommunityin.org/pci-webinar-series/

early peer review

Posted in Books, Statistics, University life with tags , , , , , , , , , , , , , on December 15, 2024 by xi'an

Nature of 24 October 2024 has a recollection article on the early days of peer review, following the Royal Society unsealing report from 1949 to 1954. With some mentions of well-known Bayesian characters like Jeffreys

“For a 1950 paper that discussed ‘anisotropic elastic continuum’ by mathematician James Oldroyd, geophysicist Harold Jeffreys wrote: `Knowing the author, I have confidence that the analysis is correct.’”

(albeit identified as a geophysicist) and Haldane

“A negative review [of Alan Turing’s 1951 paper] by scientist J.B.S. Haldane states: `I consider that the whole non-mathematical part should be re-written.’ A more positive opinion came from physicist Charles Galton Darwin, who said: `This paper is well worth printing, because it will convey to the biologist the possibilities of mathematical morphology.’ Still, Darwin criticized the proposed use of a “digital computer” to simulate wave theory. “The machinery is far too heavy for such a simple purpose,” Darwin argued.”

and Haldane again

“In a 1943 review by Haldane of a paper on the fecundity of Drosophila flies, the reviewer suggested cutting figures and tables, some of the discussion and, bizarrely, a short eulogy of a fly biologist.”