Archive for Likelihood Principle

on stopping rules

Posted in Books, Statistics with tags , , , , , , , , , , , , , , , , , on August 3, 2025 by xi'an

The workshop in Chennai and its focus on sequential procedures made me realise (among other things) I had never read Cornfield’s 1966 TAS paper on sequential testing and the likelihood principle:

“By sequential analysis I mean any form of analysis in which the conclusion depends not only on the data, but also on the stopping rule.”

Written with little maths and formalism, this paper argues that keeping a fixed critical level amounts to keeping a fixed amount of evidence. Hence constituting an early critique of p-values even though not expressed in such terms. The part of the paper related with the likelihood principle does not address testing or evidence in a Bayesian way. As a side (late awakening) remark, iid observations in sequential settings are not longer independent, conditional on the stopping rule realisation N=n, since they are constrained by the fact that the stopping rule realisation is n and not n-1, n-2, …  For a short while, I thought it was in turn impacting the distribution of any “sufficient” statistic one may propose, with a normalising constant that depends on the unknown parameter and hence cannot be neglected. Over all those years, I had never though of the modification of sufficiency characteristics in such contexts. But in fine the pair made of the value of the stopping rule and of the unsequential sufficient statistics proves enough. And the normalisation constant is the probability that the stopping rule.. stops!, which is equal to one! For the same short while, I was then wondering that the stopping rule principle!

“my second line of argument that there is a reasonable alternative explication of the idea of inference and one which leads to the rejection of sequential analysis. This explication is provided by the likelihood principle—which states that all observations leading to the same likelihood function should lead to the same conclusion.”

I thus went back to the fundamentals (!), namely [freely available] Bernardo’s and Smith’s Section 5.1.4 (reproduced in EJ’s Stopping rule appendix, also citing Cornfield at length), where the likelihood is properly defined by the joint density of the stopping rule τ and the attached sample at their realised values. And failing in the end (and a discussion with Judith)nto spot a missing normalisation constant.

Philosophies, Puzzles and Paradoxes [book review]

Posted in Books, pictures, Statistics, Travel, University life with tags , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , on May 25, 2024 by xi'an

Yudi Pawitan and Youngjo Lee have written a book that recently caught my attention within the CRC Press list of new publications. Because philosophy, puzzles, and paradoxes are definitely of interest to me (as shown by numerous entries in the ‘Og!). The subtitle of said book is A Statistician’s Search for Truth.

Reviews of the book are already available, with for instance Andrew Gelman stating that he disagrees “with much of this book, but it’s an entertaining and thought-provoking introduction to some challenging questions” or Stephen Senn starting the foreword with “This is a remarkable book: wide-ranging, ambitious, challenging and profound but also intriguing, fascinating and original.” (Senn is also cited within the book for his discussion of our revisit of Harold Jeffreys’ Theory of Probability.) Nice cover as well (albeit I could not trace the origin of it, inside or outside the book.)

The book is made of three parts, one on the philosophical approaches to truth, scientific discovery, deduction, and induction, a second one on probability theories, with philosophical motivations, Bayesian inference, and likelihood-based inference, and a third section on paradoxes. Given that both authors are senior authors who have contributed to likelihood inference throughout their career, incl. the books In All Likelihood and Generalized Linear Models with Random Effects, the likelihood approach is somewhat privileged against other statistical resolutions towards the resolution of the paradoxes, with a defence of confidence distributions and a chapter on epistemic confidence that mostly stems from recent papers by the authors, like Pawitan et al.  (2023) and Lee and Lee (2023). I find the discussion therein somewhat unclear, esp. because the same notation Pr(.) is employed for different probability notions.

“Epistemic confidence is the objective measure of uncertainty that’s attached to single events, where the objectivity is based on a consensus of rational minds.” (p.197)

The philosophy part is following the (European) Enlightenment in producing more and more involved discussions on reason, knowledge and scientific discovery. This exploration is an easy read, as it does not delve particularly deeply in the arguments of Kant, Hume, or Popper. With the apparently unescapable mention of Gödel’s incompleteness theorem, including a sausage citation from Poincaré that reminded of that strip from Tintin in America:which, most probably, he would have applied to Ais! Several sections about pseudo-rational attempts to demonstrate the existence of Dog could have been skipped as well.

The part of probability already considers paradoxes which, like the subsequent ones are mostly the consequence of using natural (and hence ambiguous) languages instead of mathematical descriptions—incl. the statement of the Likelihood Principle. It also discusses Keynes’ logical (or imprecise) probabilities, briefly if appropriately given the pessimistic views of young Keynes on the assessment of the probability of an event. Savage is privileged enough to enjoy an entire chapter discussing his 1950’s axioms leading to the existence of a (subjective)  prior on “the states of the world”. This is followed by a chapter on Inverse probability (aka Bayesian statistics), where the authors consider Bayes’ 1763 Essay to have stayed mostly unnoticed till  the beginning of the 20th Century, which sounds a somewhat subjective judgement. (And as uncovered by Steve Stiegler, the original title of the Essay was indeed intended as a reply to Hume.) A further if short chapter is dedicated to the search for the prior distribution. Which thus gives the misguided impression that there should exist such a thing, rather than acknowledging that Bayesian statements are relative to the prior measure. The remainder of the discussion on invariant and reference priors is however mostly standard. Except when falling for the marginalisation paradox when stating that a product of improper priors implies independence on p.144.

The paradoxes examined in the final part are Allais’ (an alumni of Lycée Lakanal!), and Ellsberg’s, avatars of the Saint Petersburg paradox and referring to failing to adhere to rational decision-making and not in the least to statistics. Conjunction and inclusion “fallacious fallacies”, which are central to Kahneman’s Thinking fast and slow bestseller, and attributed to reasoning in terms of likelihood rather than of probability (without accounting for multiple testing on p.228). A whole if short chapter on the Monty Hall and three prisoners paradoxes, another predictable occurrence in a book on reasoning paradoxes. Again mostly a matter of poor wording, plus relying on the choice of an underlying probability model, for which the authors again follow a likelihood approach, the number of the prize door or of the freed prisoner being the parameter. Kyburg’s (very weak) lottery paradox and related forensic paradoxes, concluding with the rejection of judgements based solely on probability reasoning. Hempel’s paradox of the ravens, a priori unrelated with statistical evidence, but turned into one by squeezing in some sampling models. Finishing with the (envelope) exchange paradox, where the authors refuse to put a prior on the unknown parameter but end up with a solution equivalent to adopting a Jeffreys prior.

In conclusion, this attempt at connecting statistical inference and philosophy, probability concepts and rational decision making, paradoxes and modelling, within a single book is academically sound and overall enjoyable, if not outstanding or remarkable as it does not constitute a radical move away from existing analyses of those classical paradoxes. Furthermore, I find the paradoxes overwhelmingly distant from genuine statistical settings and involving a rather stretched notion of data. Still, methinks I will keep this book in my bookcase, rather than leaving it for the taking in the department coffee room!

As I was completing the book and getting towards writing this book review, I also noticed a two page blurb in Significance (May 2024 issue) written by the authors on their book. (which happens rather frequently with this magazine). Unsurprisingly, the contents provd mostly extracted from the preface and introduction With a nice ravens picture (in conjunction with the raven paradox).

[Disclaimer about potential self-plagiarism: this post or an edited version may eventually appear in my Books Review section in CHANCE.]

my likelihood is dominating my prior [not!]

Posted in Kids, Statistics with tags , , , , , on August 29, 2019 by xi'an

An interesting misconception read on X validated today, with a confusion between the absolute value of the likelihood function and its variability. Which I have trouble explaining except possibly by the extrapolation from the discrete case and a confusion between the probability density of the data [scaled as a probability] and the likelihood function [scale-less]. I also had trouble convincing the originator of the question of the irrelevance of the scale of the likelihood per se, even when demonstrating that |𝚺| could vanish from the posterior with no consequence whatsoever. It is only when I thought of the case when the likelihood is constant in 𝜃 that I managed to make my case.

R wins COPSS Award!

Posted in Statistics with tags , , , , , , , , on August 4, 2019 by xi'an

Hadley Wickham from RStudio has won the 2019 COPSS Award, which expresses a rather radical switch from the traditional recipient of this award in that this recognises his many contributions to the R language and in particular to RStudio. The full quote for the nomination is his  “influential work in statistical computing, visualisation, graphics, and data analysis” including “making statistical thinking and computing accessible to a large audience”. With the last part possibly a recognition of the appeal of Open Source… (I was not in Denver for the awards ceremony, having left after the ABC session on Monday morning. Unfortunately, this session only attracted a few souls, due to the competition of twentysome other sessions, including, excusez du peu!, David Dunson’s Medallion Lecture and Michael Lavine’s IOL on the likelihood principle. And Marco Ferreira’s short-course on Bayesian time series. This is the way the joint meeting goes, but it is disappointing to reach so few people.)

a hatchet job [book review]

Posted in Books, Statistics, University life with tags , , , , , , , , on July 20, 2019 by xi'an

By happenstance, I came across a rather savage review of John Hartigan’s Bayes Theory (1984) written by Bruce Hill in HASA, including the following slivers:

“By and large this book is at its best in developing the mathematical consequences of the theory and at its worst when dealing with the underlying ideas and concepts, which seems unfortunate since Bayesian statistics is above all an attempt to deal realistically with the nature of uncertainty and decision making.” B. Hill, JASA, 1986, p.569

“Unfortunately, those who had hoped for a serious contribution to the question will be disappointed.” B. Hill, JASA, 1986, p.569

“If the primary concern is mathematical convenience, not content or meaning, then the enterprise is a very different matter from what most of us think of as Bayesian approach.” B. Hill, JASA, 1986, p.570

“Perhaps in a century or two statisticians and probabilists will reach a similar state of maturity.” B. Hill, JASA, 1986, p.570

“Perhaps this is a good place to mention that the notation in the book is formidable. Bayes’s theorem appears in a form that is  almost unrecognizable. As elsewhere, the mathematical treatment is elegant. but none of the deeper issues about the meaning and interpretation of conditional probability is discussed.” B. Hill, JASA, 1986, p.570

“The reader will find many intriguing ideas, much that is outrageous, and even some surprises (the likelihood principle is not mentioned, and conditional inference is just barely mentioned).” B. Hill, JASA, 1986, p.571

“What is disappointing to me is that with a little more discipline and effort with regard to the ideas underlying Bayesian statistics, this book could have been a major contribution to the theory.” B. Hill, JASA, 1986, p.571

Another review by William Sudderth (1985, Bulletin of the American Mathematical Society) is much kinder to the book, except for the complaint that “the pace is brisk and sometimes hard to follow”.