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Nature squeakbits [26 February 2026]

Posted in Books, pictures, Running, Travel with tags , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , on April 16, 2026 by xi'an

In this issue of Nature, uncovering the fundamental (and Ig-Nobel worth) reason why basketball shoes are squeaking, the reason being a shockwave travelling through the sole!, two tribunes against nuclear testing and “must & should” towards a successor to the START treaty… While we should ask & act for a global and if not unilateral nuclear disarmament! This alas coïncides with France announcing the increase of its nuclear arsenal and the extension of its “umbrella” to several EU countries…

And another coverage of the deplorable Trump administration dismantling the biodefense and pandemic preparedness branches of the US NIAID, presumably a late under-the-belt jab at the national institute Anthony Fauci directed for 38 years. Meaning one of the forefronts for pandemic research and vaccine development has been dismantled. Plus the US EPA revoking the 2009 statement that climate change is endangering the US population and removing greenhouse-gas emission rules. In tune with the Drill, baby, drill! motto of the Trump supporters more interested in their short-term profits than in the long-term (no-)future of the country. Paradoxically sitting in the same issue as a comment calling for a policy-making assessment of avoidable climate-change risks. Illustrated by London’s drownin’ below

And a summary of their conclusions from 23 of the 27 members (from 27 countries) of the Scientific Advisory Group for the Origin of Novel Pathogens for the WHO. After 3.5 years of debate on the origin of COVID-19! Four hypotheses are examined and other hoaxes and conspiracies are debunked.

Another political entry about the EU and its Horizon Europe programme (that is funding my ERC Synergy grant) baring (researchers from) Chinese research organisations from applying for its grants in sensitive methodologies, in order to prevent “the undesired transfer of IP”. Following similar and earlier actions in the US with the (newspeak!) China Initiative launched by Trump 1.0 that turned into a witch hunt.

An exciting 228 metres of rock and mud providing a window on the past 23 million year weather. Obtained from the West Antarctica Ice Sheet.

Nature tags & snippets [19 Feb 2026]

Posted in Books, pictures, University life with tags , , , , , , , , , , , , , , , , , , , , , on March 24, 2026 by xi'an

The cover of this 19 Feb edition of Nature is made of an hand pencilled on an Indonesian cave, possibly the oldest piece of art discovered so far. By an ancient precursor of Jean-Michel Basquiat… On more current issues,

A tribune on UKRI cutting whole branches of medical, biological and physical research in the UK, to “focus and do fewer things better¨. Impacting for instance the Medical Research Council (MRC). At least until 2028, with longer range consequences.

And an entry on Epstein, whose files have now contaminated even Nature itself. (When is Andrews MW going to make an appearance there as well?!) The connection (of interest) with science is that the sex offender and financier supported research institutions, incl. the mathematical biologist Martin Nowak, whose work Epstein reviewed (despite a total absence of credentials!). Along another entry on the Chinese Government (MOST) instituting penalties on universities failing to act on scientific misconduct by some of their staff.

And a frightful graph on the exploding number of measles cases in the US, this year, related to the drop in the proportion of vaccinated children. Correlated with the next article on regulation moves by the Trump administration to make firing government scientists much easier. And with the surge in US applicants to the major European grants, namely ERC starting, consolidator and advanced grants and Marie Skłodowska-Curie postdoctoral fellowships.

A book review of Michael Pollan’s A World Appears: A Journey into Consciousness, a New York Times bestseller and more importantly an exploration of the physical nature of consciousness. Followed by a long comment by N. Sanders (Harvard) and B. Schneier (Toronto) on the pernicious effect of high salaries in AI companies on academic research, in particular by negating the scientific worth of collaborating. Plus a regular one-column comment that “Statistical approximation is not general intelligence”..! Albeit with reasonable arguments about the unlikely emergence of an artificial general intelligence.

Last but not least, a Perspective article on the moral competence of large language models. which requires defining first moral competence and moral performances. Involving a long-term acquaintance of mine’s, Kristian Lum (now at DeepMind NY) as one of the authors.

6th Workshop on Sequential Monte Carlo Methods

Posted in Mountains, pictures, Statistics, Travel, University life with tags , , , , , , , , , , , , , , , , , , , , , , , , , , on May 16, 2024 by xi'an

Very glad to be back to an SMC workshop as it has been nine years since my attending SMC 2015 in Malakoff! The more for the workshop taking place in Edinburgh and at the Bayes Centre. It is one of these places where I feel somewhat returning to familiar grounds with accumulated memories. Like my last visit there when I had a tea with Mike Titterington…

The overall pace of the workshop was quite nice, with long breaks for informal discussions (and time for ‘oggin’!) and interesting poster late afternoons, helped by the small number of them at each instance, incl. one on reversible jump HMC. Here are a few scribbled entries about some talks along the first two days.

After my opening talk (!), Joaquín Míguez talked about the impact of a sequential (Euler-Marayama) discretisation scheme for stochastic differential equations on Bayesian filtering with control of the approximation effect. Axel Finke (in a joint work with Adrien Corenflos, now an ERC Ocean postdoc in Warwick) built a sequence of particle filter algorithms targeting good performances (high expected jumping distance) against both large dimensions and high time horizon, exploiting gradient shift MALA-like, as well as prior impact, with the conclusion that their jack-of-all-trades solutions, Particle­-MALA and Particle­-mGRAD, enjoyed this resistance in nearly normal models. Interesting reminder of the auxiliary particle trick and good insights on using the smoothing target, even when accounting for the computing time, but too many versions for a single talk without checking against the preprint.

The SMC sampler-like algorithm involves propagating N “seed” particles z(i), with a mutation mechanism consisting of the generation of N integrator snippets 𝗓:=(z,ψ⁢(z),ψ²⁢(z),…) started at every seed particle z(i), resulting in N×(T+1) particles which are then whittled down to a set of N seed particles using a standard resampling scheme. Andrieu et al., 2024

Christophe Andrieu talked about Monte Carlo sampling with integrator snippets, starting with recycling solutions for the leapfrog integrator HMC and unfolding Hamiltonians for moving more easily. With snippets representing discretised paths along the level sets being used as particles, picking zero, one, or more particles along each path, since importance weights are connection with multinomial HMC

This relatively small algorithmic modification of the conditional particle filter, which we call the conditional backward sampling particle filter has a dramatically improved performance over the conditional particle filter. Karjalainen et al., 2024

Anthony Lee looked at mixing times for backward sampling SMC (CBPF/ancestor sampling) cf Lee et al. (2020), where the backward step consists in computing the weight of a randomly drawn backward or ancestral history. Improving on earlier results to reach mixing time O(log T) and complexity O(T log T) (with T the time horizon). Thanks to maximal coupling and boundedness assumptions on the prior and likelihood functions.

Neil Chada presented a work on Bayesian multilevel Monte Carlo on deep networks. À la Giles, with a telescoping identity. Always puzzling to envision a prior on all parameters of a neural network. Achieving a computational cost inverse to the order of the MSE, at best. With a useful reminder that pushing the size of the NN to infinity results in a (poor) Gaussian process prior (Sell et al., 2023).

On my first evening, I stopped with a friend in my favourite Blonde [restaurant], as in almost every other visit to Edinburgh, enjoyable as always, but I also found the huge offer of Asian minimarkets in the area too tempting to resist, between Indian, Korean, and Chinese products. (Although with a disappointing hojicha!). As I could not reach any new Munro by train or bus within a reasonable time range I resorted to the nearer Pentland Hills, with a stop by Rosslyn Chapel (mostly of Da Vinci Code fame!, if classic enough). And some delays in finding a bus getting there (misled by google map!) and a trail (misled by my poor map reading skills) up the actual hills. The mist did not help either.