Archive for University of Bristol

unscrambling Scottish eggs for wildcats

Posted in Books, Kids, pictures, Statistics, Travel, University life with tags , , , , , , , , , , , , , , , on January 17, 2024 by xi'an


Read in Nature (and The Guardian) a report on the attempt to rewild the Scottish wildcat population due to its current high levels of domestic-cat DNA resulting from decades of interbreeding with domestic cats gone feral, even though this happened only relatively recently, in the 1960′. Thanks, rather paradoxically, to the 150 captive wildcats found in zoos and parks across the UK, more preserved from this interbreeding, by selective breeding towards removing hybrid segments of DNA from the genome of the kittens. The attempt is operated by Saving Wildcats, who have already released 19 wildcats in the Cairngorms.

“However, the project will not be a quick or an easy one”, said programme scientist Prof Mark Beaumont of Bristol University. “The idea would be to have funds to monitor what is happening in the kittens as you progress, and that costs money. A whole genome of an individual cat sets you back about $200.” The Guardian Sun 10 Dec 2023

The project is backed up by a scientific analysis of the chances of rewilding, written by Daniel J. Lawson, Jo Howard-McCombe, Mark Beaumont, and Helen Senn. (While the paper includes a modelling of the meiosis process via a simulation experiment, no ABC were harmed in running it!)

Statistics at Bristol [& U]

Posted in pictures, Statistics, Travel, University life with tags , , , , , on September 14, 2021 by xi'an

For the celebration of the recently renovated Fry Building, which I visited in Feb 2019 (my last time in Britain!), the University of Bristol is holding the Fry Conference series, with one dedicated to statistics on 16-17 September 2021. With Peter Green, Arnaud Doucet, and Judith Rousseau among the speakers. It is sadly on-line so does not give one the opportunity to admire the renovated bulding. And the Voronoi sculpture! (And You figures in the title of the conference.)

a year ago, a world away

Posted in Statistics with tags , , , , , , , , , , , , on February 24, 2021 by xi'an

general perspective on the Metropolis–Hastings kernel

Posted in Books, Statistics with tags , , , , , , , , , , , , , on January 14, 2021 by xi'an

[My Bristol friends and co-authors] Christophe Andrieu, and Anthony Lee, along with Sam Livingstone arXived a massive paper on 01 January on the Metropolis-Hastings kernel.

“Our aim is to develop a framework making establishing correctness of complex Markov chain Monte Carlo kernels a purely mechanical or algebraic exercise, while making communication of ideas simpler and unambiguous by allowing a stronger focus on essential features (…) This framework can also be used to validate kernels that do not satisfy detailed balance, i.e. which are not reversible, but a modified version thereof.”

A central notion in this highly general framework is, extending Tierney (1998), to see an MCMC kernel as a triplet involving a probability measure μ (on an extended space), an involution transform φ generalising the proposal step (i.e. þ²=id), and an associated acceptance probability ð. Then μ-reversibility occurs for

\eth(\xi)\mu(\text{d}\xi)= \eth(\phi(\xi))\mu^{\phi}(\text{d}\xi)

with the rhs involving the push-forward measure induced by μ and φ. And furthermore there is always a choice of an acceptance probability ð ensuring for this equality to happen. Interestingly, the new framework allows for mostly seamless handling of more complex versions of MCMC such as reversible jump and parallel tempering. But also non-reversible kernels, incl. for instance delayed rejection. And HMC, incl. NUTS. And pseudo-marginal, multiple-try, PDMPs, &c., &c. it is remarkable to see such a general theory emerging a this (late?) stage of the evolution of the field (and I will need more time and attention to understand its consequences).

The Fry Building [Bristol maths]

Posted in Kids, pictures, Statistics, Travel, University life with tags , , , , , , , , , , , on March 7, 2020 by xi'an

While I had heard of Bristol maths moving to the Fry Building for most of the years I visited the department, starting circa 1999, this last trip to Bristol was the opportunity for a first glimpse of the renovated building which has been done beautifully, making it the most amazing maths department I have ever visited.  It is incredibly spacious and luminous (even in one of these rare rainy days when I visited), while certainly contributing to the cohesion and interactions of the whole department. And the choice of the Voronoi structure should not have come as a complete surprise (to me), given Peter Green’s famous contribution to their construction!